$DIAS_HOME/server/default/conf/dcm4chee-ae (if you changed or added any other style sheets defining attribute coercion of incomming/outgoing DICOM messages (DIMSE) )
$DIAS_HOME/server/default/conf/dcm4chee-permission/series-permission.xsl (if you changed the series-permission style sheet defining configuration for grant/revoke Study Permissions on Series Stored)
$DIAS_HOME/bin/native ( JAI Image IO files)
$DIAS_HOME/bin (if you changed or added any other files , i.e. run.conf ,changing java heap memory)
6) Change the variables @@dbHost@@ & @@dbDatabase@@ inside $DIAS_HOME/server/default/deploy/pacs-mysql-ds.xml with the proper values.
7) Configure database user and password for pacs-mysql-ds.xml and login-config.xml files (http://www.dcm4che.org/confluence/display/ee2/How+to+configure+secure+DB+password)
8) Check server/default/deploy/jmx-console.war/inspectMBean.jsp line 151 and change the "replace" function with "replaceAll"
9) Check server/default/conf/xmdesc/dcm4chee-wado-xmbean.xml line 196, 197 and place "com.sun.media.imageioimpl.plugins.jpeg.CLibJPEGImageWriter" inside value element.